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Vidrio Technologies scanimage software (version 3.8
Scanimage Software (Version 3.8, supplied by Vidrio Technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
scanimage software (version 3.8 - by Bioz Stars, 2026-09
90/100 stars

Images

Related Articles

Recombinant:

Article Title: Anatomical distribution and functional roles of electrical synapses in Drosophila.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER w-; +; R56F03-Gal4 (EGN glia) BDSC RRID: BDSC_39157 w-; +; R85G01-Gal4 (PNG glia) BDSC RRID: BDSC_40436 w-; VT058487-AD/ +; R35G07-DBD/ + (VS/HS cells) Janelia FlyLight (https://splitgal4.janelia.org) SS04438 w-; +; VT50384-lexA (T4/T5 cells) Barry Dickson68 N/A w-; +; VT40547-Gal4 (L4 cells) Janelia FlyLight (https://flweb.janelia.org/) N/A shakB2; +; + Rodney Murphey41 N/A w-; +; 20xUAS-Valium20-shakB-RNAi BDSC RRID: BDSC_57706 w-; +; 20xUAS-Valium20-GFP-RNAi BDSC RRID: BDSC_41553 w-; 20xUAS-IVS-GCaMP6f; + BDSC RRID: BDSC_42747 w-; +; 13xlexAop-IVS-GCaMP6m BDSC RRID: BDSC_44277 w-; tubGal80ts; + BDSC RRID: BDSC_7019 w-; +; UAS-shakB-N Jonathan Bacon15 N/A Recombinant DNA pBS-KS-attB2-SA(2)-T2A-Gal4-Hsp70 DGRC DGRC# 1410 pBS-KS-attB2-SA(0)-T2A-Gal4-Hsp70 DGRC DGRC# 1412 Software and algorithms MATLAB MathWorks https://www.mathworks.com/ Python 2.7.15 and 3.8.8 Python https://www.python.org/ ScanImage 3.8 Vidrio Technologies http://scanimage.vidriotechnologies.com/ ImageJ/Fiji National Institutes of Health https://imagej.net/software/fiji/ Code used for analysis This paper https://gin.g-node.org/gammer/ Ammer_et_al_2022.git ll OPEN ACCESS Article

Article Title: Visual physiology of the layer 4 cortical circuit in silico.
Article Snippet: Two-photon imaging was performed using a Sutter Moveable Objective Microscope (Sut- ter, CA USA) coupled with a tunable Ti:Sapphire femtosecond laser (Chameleon Ultra II, Coherent USA), controlled by the open-source software ScanImage 3.8 (Janelia Research Campus/ Vidrio Technologies), to visualize L2/3 neurons in V1.

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: : ~35 mm, height: 2 mm) is fixed with silicone aquarium sealant (Dohse Aquaristik) ● Motorized micromanipulators (Luigs & Neumann) ● Silver wire (diameter: ~0.25 mm) NATURE PROTOCOLS PROTOCOL NATURE PROTOCOLS |www.nature.com/nprot 11 ● C-shaped gold wire ● Forceps (Fine Science Tools, cat. no. 11002-16) ● Hot-bead sterilizer (Fine Science Tools, cat. no. 18000-45) ● Incubator with rapid humidity recovery and copper chamber (37 °C; 5% CO2; Thermo Scientific, model no. Heracell 150i/160i) ● Micropipette puller (Narishige, model no. PC-10) ● Thin-walled borosilicate glass capillaries (WPI, cat. no. TW150F-3) ● Tissue culture dishes (60 mm, sterile; Sarstedt, cat. no. 83.1801) ● Ultrafree centrifugal filter units (Millipore, cat. no. UFC30GV0S) ● Micro-osmometer (Fiske, model no. 210) Software ● ImageJ2 (https://imagej.net/ImageJ2) ● GraphPad Prism v.7 (https://www.graphpad.com/) ● ScanImage 3.8 (ref. 31; https://vidriotechnologies.com/) ● Ephus32 (https://www.janelia.org/open-science/ephus) ● violinplot.m (Bastian Bechtold; https://github.com/bastibe/Violinplot-Matlab/blob/master/violinplot.m) ● Kinetic Studio (https://www.hi-techsci.com/instruments/kinetic-studio/)

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: A Ti:Sapphire laser system with dispersion compensation (MaiTai DeepSee, Spectra Physics) was coupled in through an electro-optical modulator (EOM, Conoptics), a 3x telescope (Thorlabs), 5 mm scan mirrors (Cambridge), a compound scan lens (f = 50 mm 33 ), a dual camera port with IR mirror (Olympus) and a water immersion objective (LUMPLFLN 60XW, 60x, NA 1.0, Olympus).

Article Title: Feedback generates a second receptive field in neurons of the visual cortex.
Article Snippet: Software and code Policy information about availability of computer code Data collection ScanImage (3.8 and 5.2; Vidrio); Matlab (2015a-2017a; MathWorks); Intan system and software (version 1.5; Intan Technologies); LabVIEW (2015 SP1 64 bit; National Instruments); custom code (https://sourceforge.net/projects/iris-scanning/); Psychophysics Toolbox (PTB-3; Open Source) Data analysis Data were analyzed with custom code written in Matlab (2015a-2017a; MathWorks) and is available online (https://sourceforge.net/ projects/iris-scanning/) or from the corresponding authors on request.

Article Title: Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy
Article Snippet: ScanImage 3.8 (Vidrio Technologies) running on MATLAB (MathWorks) was used to acquire images and control a 3D translation stage to move the sample (MP-285, Sutter Instrument Company).

Article Title: Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy
Article Snippet: Imaging software: ScanImage 3.8 , Vidrio Technologies , N/A.

Article Title: Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Article Snippet: ScanImage 3.8 -Vidrio Technologies ( ) running on MATLAB (MathWorks) was used to acquire images.

Software:

Article Title: Anatomical distribution and functional roles of electrical synapses in Drosophila.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER w-; +; R56F03-Gal4 (EGN glia) BDSC RRID: BDSC_39157 w-; +; R85G01-Gal4 (PNG glia) BDSC RRID: BDSC_40436 w-; VT058487-AD/ +; R35G07-DBD/ + (VS/HS cells) Janelia FlyLight (https://splitgal4.janelia.org) SS04438 w-; +; VT50384-lexA (T4/T5 cells) Barry Dickson68 N/A w-; +; VT40547-Gal4 (L4 cells) Janelia FlyLight (https://flweb.janelia.org/) N/A shakB2; +; + Rodney Murphey41 N/A w-; +; 20xUAS-Valium20-shakB-RNAi BDSC RRID: BDSC_57706 w-; +; 20xUAS-Valium20-GFP-RNAi BDSC RRID: BDSC_41553 w-; 20xUAS-IVS-GCaMP6f; + BDSC RRID: BDSC_42747 w-; +; 13xlexAop-IVS-GCaMP6m BDSC RRID: BDSC_44277 w-; tubGal80ts; + BDSC RRID: BDSC_7019 w-; +; UAS-shakB-N Jonathan Bacon15 N/A Recombinant DNA pBS-KS-attB2-SA(2)-T2A-Gal4-Hsp70 DGRC DGRC# 1410 pBS-KS-attB2-SA(0)-T2A-Gal4-Hsp70 DGRC DGRC# 1412 Software and algorithms MATLAB MathWorks https://www.mathworks.com/ Python 2.7.15 and 3.8.8 Python https://www.python.org/ ScanImage 3.8 Vidrio Technologies http://scanimage.vidriotechnologies.com/ ImageJ/Fiji National Institutes of Health https://imagej.net/software/fiji/ Code used for analysis This paper https://gin.g-node.org/gammer/ Ammer_et_al_2022.git ll OPEN ACCESS Article

Article Title: Visual physiology of the layer 4 cortical circuit in silico.
Article Snippet: Two-photon imaging was performed using a Sutter Moveable Objective Microscope (Sut- ter, CA USA) coupled with a tunable Ti:Sapphire femtosecond laser (Chameleon Ultra II, Coherent USA), controlled by the open-source software ScanImage 3.8 (Janelia Research Campus/ Vidrio Technologies), to visualize L2/3 neurons in V1.

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: : ~35 mm, height: 2 mm) is fixed with silicone aquarium sealant (Dohse Aquaristik) ● Motorized micromanipulators (Luigs & Neumann) ● Silver wire (diameter: ~0.25 mm) NATURE PROTOCOLS PROTOCOL NATURE PROTOCOLS |www.nature.com/nprot 11 ● C-shaped gold wire ● Forceps (Fine Science Tools, cat. no. 11002-16) ● Hot-bead sterilizer (Fine Science Tools, cat. no. 18000-45) ● Incubator with rapid humidity recovery and copper chamber (37 °C; 5% CO2; Thermo Scientific, model no. Heracell 150i/160i) ● Micropipette puller (Narishige, model no. PC-10) ● Thin-walled borosilicate glass capillaries (WPI, cat. no. TW150F-3) ● Tissue culture dishes (60 mm, sterile; Sarstedt, cat. no. 83.1801) ● Ultrafree centrifugal filter units (Millipore, cat. no. UFC30GV0S) ● Micro-osmometer (Fiske, model no. 210) Software ● ImageJ2 (https://imagej.net/ImageJ2) ● GraphPad Prism v.7 (https://www.graphpad.com/) ● ScanImage 3.8 (ref. 31; https://vidriotechnologies.com/) ● Ephus32 (https://www.janelia.org/open-science/ephus) ● violinplot.m (Bastian Bechtold; https://github.com/bastibe/Violinplot-Matlab/blob/master/violinplot.m) ● Kinetic Studio (https://www.hi-techsci.com/instruments/kinetic-studio/)

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: A Ti:Sapphire laser system with dispersion compensation (MaiTai DeepSee, Spectra Physics) was coupled in through an electro-optical modulator (EOM, Conoptics), a 3x telescope (Thorlabs), 5 mm scan mirrors (Cambridge), a compound scan lens (f = 50 mm 33 ), a dual camera port with IR mirror (Olympus) and a water immersion objective (LUMPLFLN 60XW, 60x, NA 1.0, Olympus).

Article Title: Feedback generates a second receptive field in neurons of the visual cortex.
Article Snippet: Software and code Policy information about availability of computer code Data collection ScanImage (3.8 and 5.2; Vidrio); Matlab (2015a-2017a; MathWorks); Intan system and software (version 1.5; Intan Technologies); LabVIEW (2015 SP1 64 bit; National Instruments); custom code (https://sourceforge.net/projects/iris-scanning/); Psychophysics Toolbox (PTB-3; Open Source) Data analysis Data were analyzed with custom code written in Matlab (2015a-2017a; MathWorks) and is available online (https://sourceforge.net/ projects/iris-scanning/) or from the corresponding authors on request.

Article Title: Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy
Article Snippet: ScanImage 3.8 (Vidrio Technologies) running on MATLAB (MathWorks) was used to acquire images and control a 3D translation stage to move the sample (MP-285, Sutter Instrument Company).

Article Title: Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy
Article Snippet: Imaging software: ScanImage 3.8 , Vidrio Technologies , N/A.

Article Title: Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Article Snippet: ScanImage 3.8 -Vidrio Technologies ( ) running on MATLAB (MathWorks) was used to acquire images.

Imaging:

Article Title: Anatomical distribution and functional roles of electrical synapses in Drosophila.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER w-; +; R56F03-Gal4 (EGN glia) BDSC RRID: BDSC_39157 w-; +; R85G01-Gal4 (PNG glia) BDSC RRID: BDSC_40436 w-; VT058487-AD/ +; R35G07-DBD/ + (VS/HS cells) Janelia FlyLight (https://splitgal4.janelia.org) SS04438 w-; +; VT50384-lexA (T4/T5 cells) Barry Dickson68 N/A w-; +; VT40547-Gal4 (L4 cells) Janelia FlyLight (https://flweb.janelia.org/) N/A shakB2; +; + Rodney Murphey41 N/A w-; +; 20xUAS-Valium20-shakB-RNAi BDSC RRID: BDSC_57706 w-; +; 20xUAS-Valium20-GFP-RNAi BDSC RRID: BDSC_41553 w-; 20xUAS-IVS-GCaMP6f; + BDSC RRID: BDSC_42747 w-; +; 13xlexAop-IVS-GCaMP6m BDSC RRID: BDSC_44277 w-; tubGal80ts; + BDSC RRID: BDSC_7019 w-; +; UAS-shakB-N Jonathan Bacon15 N/A Recombinant DNA pBS-KS-attB2-SA(2)-T2A-Gal4-Hsp70 DGRC DGRC# 1410 pBS-KS-attB2-SA(0)-T2A-Gal4-Hsp70 DGRC DGRC# 1412 Software and algorithms MATLAB MathWorks https://www.mathworks.com/ Python 2.7.15 and 3.8.8 Python https://www.python.org/ ScanImage 3.8 Vidrio Technologies http://scanimage.vidriotechnologies.com/ ImageJ/Fiji National Institutes of Health https://imagej.net/software/fiji/ Code used for analysis This paper https://gin.g-node.org/gammer/ Ammer_et_al_2022.git ll OPEN ACCESS Article

Article Title: Visual physiology of the layer 4 cortical circuit in silico.
Article Snippet: Two-photon imaging was performed using a Sutter Moveable Objective Microscope (Sut- ter, CA USA) coupled with a tunable Ti:Sapphire femtosecond laser (Chameleon Ultra II, Coherent USA), controlled by the open-source software ScanImage 3.8 (Janelia Research Campus/ Vidrio Technologies), to visualize L2/3 neurons in V1.

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: : ~35 mm, height: 2 mm) is fixed with silicone aquarium sealant (Dohse Aquaristik) ● Motorized micromanipulators (Luigs & Neumann) ● Silver wire (diameter: ~0.25 mm) NATURE PROTOCOLS PROTOCOL NATURE PROTOCOLS |www.nature.com/nprot 11 ● C-shaped gold wire ● Forceps (Fine Science Tools, cat. no. 11002-16) ● Hot-bead sterilizer (Fine Science Tools, cat. no. 18000-45) ● Incubator with rapid humidity recovery and copper chamber (37 °C; 5% CO2; Thermo Scientific, model no. Heracell 150i/160i) ● Micropipette puller (Narishige, model no. PC-10) ● Thin-walled borosilicate glass capillaries (WPI, cat. no. TW150F-3) ● Tissue culture dishes (60 mm, sterile; Sarstedt, cat. no. 83.1801) ● Ultrafree centrifugal filter units (Millipore, cat. no. UFC30GV0S) ● Micro-osmometer (Fiske, model no. 210) Software ● ImageJ2 (https://imagej.net/ImageJ2) ● GraphPad Prism v.7 (https://www.graphpad.com/) ● ScanImage 3.8 (ref. 31; https://vidriotechnologies.com/) ● Ephus32 (https://www.janelia.org/open-science/ephus) ● violinplot.m (Bastian Bechtold; https://github.com/bastibe/Violinplot-Matlab/blob/master/violinplot.m) ● Kinetic Studio (https://www.hi-techsci.com/instruments/kinetic-studio/)

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: A Ti:Sapphire laser system with dispersion compensation (MaiTai DeepSee, Spectra Physics) was coupled in through an electro-optical modulator (EOM, Conoptics), a 3x telescope (Thorlabs), 5 mm scan mirrors (Cambridge), a compound scan lens (f = 50 mm 33 ), a dual camera port with IR mirror (Olympus) and a water immersion objective (LUMPLFLN 60XW, 60x, NA 1.0, Olympus).

Article Title: Feedback generates a second receptive field in neurons of the visual cortex.
Article Snippet: Software and code Policy information about availability of computer code Data collection ScanImage (3.8 and 5.2; Vidrio); Matlab (2015a-2017a; MathWorks); Intan system and software (version 1.5; Intan Technologies); LabVIEW (2015 SP1 64 bit; National Instruments); custom code (https://sourceforge.net/projects/iris-scanning/); Psychophysics Toolbox (PTB-3; Open Source) Data analysis Data were analyzed with custom code written in Matlab (2015a-2017a; MathWorks) and is available online (https://sourceforge.net/ projects/iris-scanning/) or from the corresponding authors on request.

Article Title: Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy
Article Snippet: ScanImage 3.8 (Vidrio Technologies) running on MATLAB (MathWorks) was used to acquire images and control a 3D translation stage to move the sample (MP-285, Sutter Instrument Company).

Article Title: Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy
Article Snippet: Imaging software: ScanImage 3.8 , Vidrio Technologies , N/A.

Article Title: Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Article Snippet: ScanImage 3.8 -Vidrio Technologies ( ) running on MATLAB (MathWorks) was used to acquire images.

Functional Assay:

Article Title: Anatomical distribution and functional roles of electrical synapses in Drosophila.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER w-; +; R56F03-Gal4 (EGN glia) BDSC RRID: BDSC_39157 w-; +; R85G01-Gal4 (PNG glia) BDSC RRID: BDSC_40436 w-; VT058487-AD/ +; R35G07-DBD/ + (VS/HS cells) Janelia FlyLight (https://splitgal4.janelia.org) SS04438 w-; +; VT50384-lexA (T4/T5 cells) Barry Dickson68 N/A w-; +; VT40547-Gal4 (L4 cells) Janelia FlyLight (https://flweb.janelia.org/) N/A shakB2; +; + Rodney Murphey41 N/A w-; +; 20xUAS-Valium20-shakB-RNAi BDSC RRID: BDSC_57706 w-; +; 20xUAS-Valium20-GFP-RNAi BDSC RRID: BDSC_41553 w-; 20xUAS-IVS-GCaMP6f; + BDSC RRID: BDSC_42747 w-; +; 13xlexAop-IVS-GCaMP6m BDSC RRID: BDSC_44277 w-; tubGal80ts; + BDSC RRID: BDSC_7019 w-; +; UAS-shakB-N Jonathan Bacon15 N/A Recombinant DNA pBS-KS-attB2-SA(2)-T2A-Gal4-Hsp70 DGRC DGRC# 1410 pBS-KS-attB2-SA(0)-T2A-Gal4-Hsp70 DGRC DGRC# 1412 Software and algorithms MATLAB MathWorks https://www.mathworks.com/ Python 2.7.15 and 3.8.8 Python https://www.python.org/ ScanImage 3.8 Vidrio Technologies http://scanimage.vidriotechnologies.com/ ImageJ/Fiji National Institutes of Health https://imagej.net/software/fiji/ Code used for analysis This paper https://gin.g-node.org/gammer/ Ammer_et_al_2022.git ll OPEN ACCESS Article

Article Title: Visual physiology of the layer 4 cortical circuit in silico.
Article Snippet: Two-photon imaging was performed using a Sutter Moveable Objective Microscope (Sut- ter, CA USA) coupled with a tunable Ti:Sapphire femtosecond laser (Chameleon Ultra II, Coherent USA), controlled by the open-source software ScanImage 3.8 (Janelia Research Campus/ Vidrio Technologies), to visualize L2/3 neurons in V1.

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: : ~35 mm, height: 2 mm) is fixed with silicone aquarium sealant (Dohse Aquaristik) ● Motorized micromanipulators (Luigs & Neumann) ● Silver wire (diameter: ~0.25 mm) NATURE PROTOCOLS PROTOCOL NATURE PROTOCOLS |www.nature.com/nprot 11 ● C-shaped gold wire ● Forceps (Fine Science Tools, cat. no. 11002-16) ● Hot-bead sterilizer (Fine Science Tools, cat. no. 18000-45) ● Incubator with rapid humidity recovery and copper chamber (37 °C; 5% CO2; Thermo Scientific, model no. Heracell 150i/160i) ● Micropipette puller (Narishige, model no. PC-10) ● Thin-walled borosilicate glass capillaries (WPI, cat. no. TW150F-3) ● Tissue culture dishes (60 mm, sterile; Sarstedt, cat. no. 83.1801) ● Ultrafree centrifugal filter units (Millipore, cat. no. UFC30GV0S) ● Micro-osmometer (Fiske, model no. 210) Software ● ImageJ2 (https://imagej.net/ImageJ2) ● GraphPad Prism v.7 (https://www.graphpad.com/) ● ScanImage 3.8 (ref. 31; https://vidriotechnologies.com/) ● Ephus32 (https://www.janelia.org/open-science/ephus) ● violinplot.m (Bastian Bechtold; https://github.com/bastibe/Violinplot-Matlab/blob/master/violinplot.m) ● Kinetic Studio (https://www.hi-techsci.com/instruments/kinetic-studio/)

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: A Ti:Sapphire laser system with dispersion compensation (MaiTai DeepSee, Spectra Physics) was coupled in through an electro-optical modulator (EOM, Conoptics), a 3x telescope (Thorlabs), 5 mm scan mirrors (Cambridge), a compound scan lens (f = 50 mm 33 ), a dual camera port with IR mirror (Olympus) and a water immersion objective (LUMPLFLN 60XW, 60x, NA 1.0, Olympus).

Article Title: Feedback generates a second receptive field in neurons of the visual cortex.
Article Snippet: Software and code Policy information about availability of computer code Data collection ScanImage (3.8 and 5.2; Vidrio); Matlab (2015a-2017a; MathWorks); Intan system and software (version 1.5; Intan Technologies); LabVIEW (2015 SP1 64 bit; National Instruments); custom code (https://sourceforge.net/projects/iris-scanning/); Psychophysics Toolbox (PTB-3; Open Source) Data analysis Data were analyzed with custom code written in Matlab (2015a-2017a; MathWorks) and is available online (https://sourceforge.net/ projects/iris-scanning/) or from the corresponding authors on request.

Article Title: Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy
Article Snippet: ScanImage 3.8 (Vidrio Technologies) running on MATLAB (MathWorks) was used to acquire images and control a 3D translation stage to move the sample (MP-285, Sutter Instrument Company).

Article Title: Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy
Article Snippet: Imaging software: ScanImage 3.8 , Vidrio Technologies , N/A.

Article Title: Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Article Snippet: ScanImage 3.8 -Vidrio Technologies ( ) running on MATLAB (MathWorks) was used to acquire images.

Microscopy:

Article Title: Anatomical distribution and functional roles of electrical synapses in Drosophila.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER w-; +; R56F03-Gal4 (EGN glia) BDSC RRID: BDSC_39157 w-; +; R85G01-Gal4 (PNG glia) BDSC RRID: BDSC_40436 w-; VT058487-AD/ +; R35G07-DBD/ + (VS/HS cells) Janelia FlyLight (https://splitgal4.janelia.org) SS04438 w-; +; VT50384-lexA (T4/T5 cells) Barry Dickson68 N/A w-; +; VT40547-Gal4 (L4 cells) Janelia FlyLight (https://flweb.janelia.org/) N/A shakB2; +; + Rodney Murphey41 N/A w-; +; 20xUAS-Valium20-shakB-RNAi BDSC RRID: BDSC_57706 w-; +; 20xUAS-Valium20-GFP-RNAi BDSC RRID: BDSC_41553 w-; 20xUAS-IVS-GCaMP6f; + BDSC RRID: BDSC_42747 w-; +; 13xlexAop-IVS-GCaMP6m BDSC RRID: BDSC_44277 w-; tubGal80ts; + BDSC RRID: BDSC_7019 w-; +; UAS-shakB-N Jonathan Bacon15 N/A Recombinant DNA pBS-KS-attB2-SA(2)-T2A-Gal4-Hsp70 DGRC DGRC# 1410 pBS-KS-attB2-SA(0)-T2A-Gal4-Hsp70 DGRC DGRC# 1412 Software and algorithms MATLAB MathWorks https://www.mathworks.com/ Python 2.7.15 and 3.8.8 Python https://www.python.org/ ScanImage 3.8 Vidrio Technologies http://scanimage.vidriotechnologies.com/ ImageJ/Fiji National Institutes of Health https://imagej.net/software/fiji/ Code used for analysis This paper https://gin.g-node.org/gammer/ Ammer_et_al_2022.git ll OPEN ACCESS Article

Article Title: Visual physiology of the layer 4 cortical circuit in silico.
Article Snippet: Two-photon imaging was performed using a Sutter Moveable Objective Microscope (Sut- ter, CA USA) coupled with a tunable Ti:Sapphire femtosecond laser (Chameleon Ultra II, Coherent USA), controlled by the open-source software ScanImage 3.8 (Janelia Research Campus/ Vidrio Technologies), to visualize L2/3 neurons in V1.

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: : ~35 mm, height: 2 mm) is fixed with silicone aquarium sealant (Dohse Aquaristik) ● Motorized micromanipulators (Luigs & Neumann) ● Silver wire (diameter: ~0.25 mm) NATURE PROTOCOLS PROTOCOL NATURE PROTOCOLS |www.nature.com/nprot 11 ● C-shaped gold wire ● Forceps (Fine Science Tools, cat. no. 11002-16) ● Hot-bead sterilizer (Fine Science Tools, cat. no. 18000-45) ● Incubator with rapid humidity recovery and copper chamber (37 °C; 5% CO2; Thermo Scientific, model no. Heracell 150i/160i) ● Micropipette puller (Narishige, model no. PC-10) ● Thin-walled borosilicate glass capillaries (WPI, cat. no. TW150F-3) ● Tissue culture dishes (60 mm, sterile; Sarstedt, cat. no. 83.1801) ● Ultrafree centrifugal filter units (Millipore, cat. no. UFC30GV0S) ● Micro-osmometer (Fiske, model no. 210) Software ● ImageJ2 (https://imagej.net/ImageJ2) ● GraphPad Prism v.7 (https://www.graphpad.com/) ● ScanImage 3.8 (ref. 31; https://vidriotechnologies.com/) ● Ephus32 (https://www.janelia.org/open-science/ephus) ● violinplot.m (Bastian Bechtold; https://github.com/bastibe/Violinplot-Matlab/blob/master/violinplot.m) ● Kinetic Studio (https://www.hi-techsci.com/instruments/kinetic-studio/)

Article Title: High-speed imaging of glutamate release with genetically encoded sensors
Article Snippet: A Ti:Sapphire laser system with dispersion compensation (MaiTai DeepSee, Spectra Physics) was coupled in through an electro-optical modulator (EOM, Conoptics), a 3x telescope (Thorlabs), 5 mm scan mirrors (Cambridge), a compound scan lens (f = 50 mm 33 ), a dual camera port with IR mirror (Olympus) and a water immersion objective (LUMPLFLN 60XW, 60x, NA 1.0, Olympus).

Article Title: Feedback generates a second receptive field in neurons of the visual cortex.
Article Snippet: Software and code Policy information about availability of computer code Data collection ScanImage (3.8 and 5.2; Vidrio); Matlab (2015a-2017a; MathWorks); Intan system and software (version 1.5; Intan Technologies); LabVIEW (2015 SP1 64 bit; National Instruments); custom code (https://sourceforge.net/projects/iris-scanning/); Psychophysics Toolbox (PTB-3; Open Source) Data analysis Data were analyzed with custom code written in Matlab (2015a-2017a; MathWorks) and is available online (https://sourceforge.net/ projects/iris-scanning/) or from the corresponding authors on request.

Article Title: Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy
Article Snippet: ScanImage 3.8 (Vidrio Technologies) running on MATLAB (MathWorks) was used to acquire images and control a 3D translation stage to move the sample (MP-285, Sutter Instrument Company).

Article Title: Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy
Article Snippet: Imaging software: ScanImage 3.8 , Vidrio Technologies , N/A.

Article Title: Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Article Snippet: ScanImage 3.8 -Vidrio Technologies ( ) running on MATLAB (MathWorks) was used to acquire images.



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